在上一篇《生物信息软件安装[1]》中我们已经介绍了R语言的安装,不过我们在使用R的过程中,经常会遇到使用R的其他模块,比如需要使用ggplot2包,所以我们就需要在R安装的基础上安装ggplot2包。
安装完成R之后,进入R的控制台,按照以下命令进行操作即可:
[root@celloud ~]# R
R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
Copyright (C) 2014 The R Foundation for Statistical Computing
Platform: x86_64-unknown-linux-gnu (64-bit)
R是自由软件,不带任何担保。
在某些条件下你可以将其自由散布。
用'license()'或'licence()'来看散布的详细条件。
R是个合作计划,有许多人为之做出了贡献.
用'contributors()'来看合作者的详细情况
用'citation()'会告诉你如何在出版物中正确地引用R或R程序包。
用'demo()'来看一些示范程序,用'help()'来阅读在线帮助文件,或
用'help.start()'通过HTML浏览器来看帮助文件。
用'q()'退出R.
> install.packages("ggplot2");
--- 在此連線階段时请选用CRAN的鏡子 ---
CRAN mirror
1: 0-Cloud 2: Argentina (La Plata)
3: Argentina (Mendoza) 4: Australia (Canberra)
5: Australia (Melbourne) 6: Austria
7: Belgium 8: Brazil (BA)
9: Brazil (PR) 10: Brazil (RJ)
11: Brazil (SP 1) 12: Brazil (SP 2)
13: Canada (BC) 14: Canada (NS)
15: Canada (ON) 16: Canada (QC 1)
17: Canada (QC 2) 18: Chile
19: China (Beijing 1) 20: China (Beijing 2)
21: China (Hefei) 22: China (Xiamen)
23: Colombia (Bogota) 24: Colombia (Cali)
25: Czech Republic 26: Denmark
27: Ecuador 28: El Salvador
29: Estonia 30: France (Lyon 1)
31: France (Lyon 2) 32: France (Montpellier)
33: France (Paris 1) 34: France (Paris 2)
35: France (Strasbourg) 36: Germany (Berlin)
37: Germany (Bonn) 38: Germany (Goettingen)
39: Germany (Frankfurt) 40: Germany (Münster)
41: Greece 42: Hungary
43: Iceland 44: India
45: Indonesia (Jakarta) 46: Indonesia (Jember)
47: Iran 48: Ireland
49: Italy (Milano) 50: Italy (Padua)
51: Italy (Palermo) 52: Japan (Hyogo)
53: Japan (Tokyo) 54: Japan (Tsukuba)
55: Korea (Seoul 1) 56: Korea (Seoul 2)
57: Lebanon 58: Mexico (Mexico City)
59: Mexico (Texcoco) 60: Netherlands (Amsterdam)
61: Netherlands (Utrecht) 62: New Zealand
63: Norway 64: Philippines
65: Poland 66: Portugal
67: Russia 68: Singapore
69: Slovakia 70: South Africa (Cape Town)
71: South Africa (Johannesburg) 72: Spain (A Coruña)
73: Spain (Madrid) 74: Sweden
75: Switzerland 76: Taiwan (Chungli)
77: Taiwan (Taichung) 78: Taiwan (Taipei)
79: Thailand 80: Turkey
81: UK (Bristol) 82: UK (Cambridge)
83: UK (London) 84: UK (London)
85: UK (St Andrews) 86: USA (CA 1)
87: USA (CA 2) 88: USA (IA)
89: USA (IN) 90: USA (KS)
91: USA (MD) 92: USA (MI)
93: USA (MO) 94: USA (OH)
95: USA (OR) 96: USA (PA 1)
97: USA (PA 2) 98: USA (TN)
99: USA (TX 1) 100: USA (WA 1)
101: USA (WA 2) 102: Venezuela
103: Vietnam
Selection: 20
试开URL’http://mirror.bjtu.edu.cn/cran/src/contrib/ggplot2_1.0.0.tar.gz'
Content type 'application/octet-stream' length 2351447 bytes (2.2 Mb)
打开了URL
==================================================
downloaded 2.2 Mb
* installing *source* package ‘ggplot2’ ...
** 成功将‘ggplot2’程序包解包并MD5和检查
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ggplot2)
下载的程序包在
‘/tmp/RtmpnyI2Yi/downloaded_packages’里
更新'.Library'里的HTML程序包列表
Making 'packages.html' ... 做完了。
>